For me, overall, it’s L’Arc-en-Ciel, GLAY and Kuroyume. I think those three had the best balance of success, longevity and influence on the J-rock/VK scene. But I’m partial to the more pop side of VK, so there’s some of my own bias in there.
I think DIR EN GREY, MUCC and the GazettE would be good picks if we’re talking specifically about the overseas VK fandom, but I’d probably swap L’Arc in for MUCC since I think they’ve got a bit broader of a following because of their anime themes.
This user on note created a list of the bands from that vk genealogy television program I watched several years ago, and it seemed to check out for me (goes up to the 2010s.) You would just have to pick your three from each era: